Capstone: Your Research AI Toolkit
Build your complete research AI toolkit — integrating literature review, experimental design, data analysis, writing, figures, and publishing into a sustainable workflow.
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You’ve learned AI workflows for every stage of research: finding literature, designing experiments, analyzing data, writing papers, creating figures, and navigating publication. Now it’s time to build a system that integrates these tools into your daily practice — a research AI toolkit that makes every project faster without sacrificing rigor.
🔄 Quick Recall: Throughout this course, one principle has been constant: AI generates, the scientist verifies. This capstone integrates all your workflows into a sustainable research practice.
Your Research AI Toolkit
Tools by Research Stage
| Stage | Primary Tool | Backup/Alternative | Verification Method |
|---|---|---|---|
| Literature search | Semantic Scholar | Elicit, PubMed | Check every citation exists and says what AI claims |
| Citation mapping | Connected Papers | Research Rabbit | Verify connections against actual citation data |
| Citation quality | Scite | Manual Scopus check | Read contrasting papers yourself |
| Experimental design | AI assistants | G*Power for power analysis | Pilot test every protocol |
| Statistical analysis | Julius AI / JASP | R or Python for replication | Verify assumptions, spot-check calculations |
| Writing & editing | Writefull / Paperpal | AI assistants for restructuring | Check meaning preservation, verify citations |
| Figures | Discipline-specific tools | AI assistants for captions | Match every number to source data |
| Submission prep | AI pre-submission checklist | Manual journal checklist | Cross-check every requirement |
✅ Quick Check: Look at the “Verification Method” column. Which verification would catch the most damaging error if skipped? (Answer: Citation verification. A fabricated reference that enters a published paper can lead to retraction, career damage, and loss of credibility. Assumption violations in statistics are fixable in revision; inaccurate figures get caught in proofs. But a fake citation that passes through review can haunt you indefinitely.)
Capstone Exercise
Part 1: Research Project Audit
Map your current (or next) research project to the AI toolkit.
My research project audit:
Project title: [name]
Current stage: [literature review / design / data collection /
analysis / writing / submission]
For each stage, identify:
1. Which AI tools I'll use (from the toolkit above)
2. My verification protocol for that stage
3. Estimated time savings vs. manual approach
4. Risks specific to AI use at this stage
Stages:
- Literature review: Tool: ___ | Verification: ___ | Time saved: ___
- Experimental design: Tool: ___ | Verification: ___ | Time saved: ___
- Data analysis: Tool: ___ | Verification: ___ | Time saved: ___
- Writing: Tool: ___ | Verification: ___ | Time saved: ___
- Figures: Tool: ___ | Verification: ___ | Time saved: ___
- Submission: Tool: ___ | Verification: ___ | Time saved: ___
Part 2: AI Disclosure Template
Every paper needs an AI disclosure statement. Build yours now.
AI Use Disclosure (for Methods section):
Literature review: [tool names] were used for initial literature
search and citation network mapping. All citations were
independently verified in [database names].
Experimental design: [tool/approach] assisted with [specific task].
All design decisions were made by the authors.
Data analysis: Statistical test selection was assisted by [tool].
All assumptions were verified [manually/using specific tests].
Results were replicated in [software, version].
Writing: [tool names] were used for [language editing /
structural suggestions / grammar checking]. All scientific
content, interpretations, and conclusions are the authors' own.
Figures: [tool names] assisted with [figure generation /
caption drafting]. All visual elements were verified against
source data by the authors.
No AI tool is listed as an author, as AI systems cannot take
responsibility for the accuracy, integrity, or originality of
the work.
Part 3: Weekly Research AI Routine
Build sustainable habits, not one-time workflows.
| Day | Activity | Time | Tool |
|---|---|---|---|
| Monday | Literature monitoring (check new papers) | 15 min | Research Rabbit + Google Scholar Alerts |
| Tuesday-Thursday | Core research (design, data, analysis) | As needed | Stage-appropriate tools |
| Friday | Writing session (draft or edit) | 2 hours | Writefull + AI assistant |
| Monthly | Citation audit (verify all new references) | 30 min | Scite + manual database check |
| Per submission | Pre-submission checklist | 1 hour | AI checklist + manual review |
Course Review
| Lesson | Key Skill | What You Can Now Do |
|---|---|---|
| 1. Welcome | AI literacy for research | Understand the research AI stack and the verify-everything principle |
| 2. Literature Review | AI-powered discovery | Search 200M+ papers, map citations, synthesize evidence |
| 3. Experimental Design | AI-assisted planning | Refine hypotheses, calculate power, identify confounds |
| 4. Data Analysis | AI-guided statistics | Select tests, check assumptions, generate visualizations |
| 5. Writing | AI-edited manuscripts | Draft sections, edit prose, maintain scientific voice |
| 6. Figures & Supplementary | AI-assisted visuals | Create publication-quality figures and organize supplements |
| 7. Peer Review & Publishing | AI-supported submission | Select journals, respond to reviewers, navigate OA |
| 8. Capstone | Integrated workflow | Apply AI at every stage with systematic verification |
Key Takeaways
- AI adds value at every research stage, but specialized tools outperform general AI for specific tasks — use the right tool for the right job
- Citation verification is the single most important check in AI-assisted research — it protects your credibility and your career
- Build AI into weekly habits (15-minute literature scans, regular writing sessions) rather than treating it as a special event
- Every paper needs an AI disclosure statement in the Methods section — be specific about what tools were used and how outputs were verified
- The time savings from AI-assisted research compound across projects — the workflows you build now accelerate every future paper
- AI generates; you verify, interpret, and take responsibility. This principle never changes, regardless of how sophisticated the tools become
What’s Next
You’ve completed the AI for Scientists (Lab to Paper) course. Here’s your action plan:
- This week: Set up your literature monitoring workflow (Research Rabbit + Google Scholar Alerts) for your current research topic
- This month: Apply AI-assisted workflows to one stage of a current project — start with whichever stage you spend the most time on
- This quarter: Use the complete toolkit for a new paper from literature review through submission
- This year: Refine your workflows based on experience and share effective practices with your lab or department
The researchers who adopt AI thoughtfully — with systematic verification at every stage — don’t just publish faster. They publish better: more thorough literature reviews, better-powered experiments, cleaner analyses, and clearer writing. Your scientific judgment is the constant; AI is the multiplier.
Knowledge Check
Complete the quiz above first
Lesson completed!